Exploring eco-engineering methods to mitigate glyphosate residue risks in agricultural systems
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Abstract
Ongoing scientific and regulatory evaluations scrutinize glyphosate’s health and environmental risks, despite its economic benefits in weed control, requiring evidence-based approaches to address persistent controversy. This systematic review synthesizes 42 studies (2000–2024) from Scopus, Web of Science, PubMed, and Google Scholar, adhering to PRISMA guidelines, to evaluate glyphosate residue risks and mitigation strategies in agricultural systems. Glyphosate, a cost-effective herbicide, shows global residue contamination, with concentrations ranging from 0.003 mg kg−1 in Italian vegetables to 5.06 mg kg−1 in Thai soybeans. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) achieved detection limits as low as 0.002 mg kg-1, yet adjuvant synergism (e.g., polyethoxylated tallow amine-induced DNA damage in A549 cells) was understudied. Eco-engineering methods, including adsorption (92% removal via graphene oxide) and microbial degradation (85.8% efficiency by Pseudomonas aeruginosa), showed promise but lacked scalability. Critical regulatory gaps persist, such as inconsistent monitoring of persistent metabolites like AMPA and inadequate assessment of chronic low-dose exposure risks. This study advances a holistic framework integrating precise detection, adjuvant toxicity evaluation, and scalable bio-remediation, emphasizing harmonized global standards and reduced glyphosate reliance. By bridging agricultural productivity with environmental stewardship, it offers novel insights into reconciling weed management efficacy with planetary health imperatives.
Abstract
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1. Introduction
The importance of access to healthy food and nutrition as one of the basic necessities of human life is undeniable. Agricultural crops and food must be free of chemical contaminants to achieve this purpose [1]. In general, chemical pesticide residues, particularly herbicides, are recognized as critical sources of contamination in agricultural products and food chains [2,3]. With advancements in analytical techniques and the development of reliable methods for detecting chemical residues, global concerns about herbicide persistence have stimulated extensive research to evaluate the safety of agrochemicals in ecosystems.
Herbicides, depending on their class and formulation, act either in the soil (pre-plant and pre-emergence applications) or on target plants (post-emergence applications) [4]. While their primary objective is to control weeds and safeguard crop yields, a significant proportion of applied herbicides fails to reach target sites due to microbial degradation, leaching, runoff, photodecomposition, or adsorption to soil organic matter [5–8]. These pathways contribute to environmental contamination, affecting non-target organisms and ecosystems. Residues accumulate in crops, fruits, vegetables, and animal products, ultimately endangering human health through contaminated food, seafood, and dairy [9].
Glyphosate, a broad-spectrum herbicide, dominates global agricultural and non-agricultural applications due to its efficacy and cost-effectiveness [10–12]. However, its ubiquity has raised concerns about environmental persistence and human health risks. Recent studies highlight glyphosate’s potential to disrupt soil microbiomes, reduce biodiversity, and bioaccumulate in aquatic systems [13,14]. For instance, Madani and Carpenter [15] synthesized evidence linking glyphosate exposure to endocrine disruption in mammals, while Battisti et al. [16] demonstrated its sublethal effects on pollinator species, underscoring broader ecological ramifications. Various studies have detected glyphosate residues in 59% of U.S. honey samples [17], and even human urine [18], underscoring its pervasive infiltration into ecosystems and human biomatrices. Advances in analytical methodologies, particularly liquid chromatography-tandem mass spectrometry (LC-MS/MS), have enabled detection limits as low as 0.002 mg kg−1 [19]. Also, advanced techniques such as high-resolution mass spectrometry and immunoassay-based biosensors, have revealed trace residues in processed foods and drinking water, challenging previous assumptions about its rapid degradation [20,21].
Despite growing evidence, a critical gap remains in synthesizing mitigation strategies that align with sustainable agricultural practices. Existing reviews predominantly focus on glyphosate’s toxicological profiles or regulatory policies [22–24], with limited integration of eco-engineering approaches to reduce residue accumulation. For example, Nguyen et al. [25] presented Rhodococcus soli G41 as a solution for glyphosate bioremediation, though their study primarily emphasizes its performance under controlled laboratory conditions. Mitigation strategies have similarly advanced, with adsorption techniques like graphene oxide composites achieving 92% glyphosate removal [26] and microbial consortia such as Pseudomonas aeruginosa degrading 85.8% of soil-bound residues [27]. However, challenges such as scalability issues, the accumulation of metabolites like AMPA, and ecological trade-offs remain significant obstacles.
This study addresses these gaps by providing a systematic review of the risk associated with glyphosate residues contamination and residual determination in crops and food as well as the eco-engineering strategies to mitigate glyphosate residue risks. By integrating ecological science with engineering principles, this manuscript offers a holistic framework to reduce glyphosate persistence without compromising agricultural productivity. Our findings aim to inform policymakers, agronomists, and environmental engineers seeking scalable solutions for sustainable glyphosate management.
1.1. An Overview of Glyphosate
As a commonly used non-selective systemic herbicide, glyphosate is an economical tool and very efficient to weed management in various crops [28]. As a non-selective herbicide, glyphosate is used primarily on agricultural fields where glyphosate-resistant or tolerant crop varieties are grown, such as roundup ready corn and soybean varieties. Monsanto formulated this herbicide in the 1970s [29]. Glyphosate has been known as a widely used herbicide since its inception in the agrochemical market; however, in the mid-1990s, with the introduction of glyphosate-tolerant genetically modified crops, the application of this herbicide was significantly increased and has become the most widely used herbicide worldwide [30]. This herbicide has dramatically minimized the usage of other herbicide classes. On the other hand, the high efficiency of glyphosate leads to the development of reduced tillage systems. These systems improve soil-related factors, reduce herbicide leaching and, soil erosion compared to conventional tillage systems [31,32].
Although there have been claims that glyphosate is low toxicity for the environment, mammals, and water resources pollution, there have been numerous violations in various countries and conditions. In this regard, there has been concern that the enormous use of glyphosate may have unintentional and unwanted adverse effects. These considerations include glyphosate residues in drinking water, plants, food cycles, and human bodies [33]. Other concerns associated with the widespread application of this herbicide are interactions with plant nutrition, the impacts on soil microbial population, and the emergence of superweeds and resistant weeds. Geng et al. [34] detected the residues of glyphosate and its metabolites in surface and groundwater samples in china with concentration ranges of 2.09 to 32.49 μg L−1. Soil contamination due to glyphosate residues is associated with its absorption by soil organic matter and clay particles. Accordingly, DT90 value of more than 1000 days was estimated for this herbicide in the soil environment [35]. Poudyal et al. [36] detected the residues of glyphosate in human urine samples in United States. Also, significant residue levels of glyphosate were found in the liver, kidney, muscles, and intestine of slaughtered cows in Germany [37]. Despite the high effectiveness of glyphosate for weed control, the continuous application of this herbicide has led to the development of superweeds, which tolerate different dosages of glyphosate [38].
Isopropylamine salt is the typical glyphosate formulation form. Glyphosate inhibits 5-enolpyruvylshikimate-3-phosphate (EPSP), which synthesizes phenylalanine, tyrosine, and tryptophan in the shikimate pathway and disrupts protein synthesis and ultimately destroying the sensitive plants (Fig. 1). This enzyme is expressed by plants and some microorganisms but not by animals. Aromatic amino acids cannot be synthesized by animals [39]. Consequently, animals and other organisms without this pathway are less toxic to glyphosate. Protein synthesis requires these three essential amino acids. These amino acids are also necessary for photosynthesis and carotenoid synthesis, which depend on indole acetic-3-acid and plastoquinone [40]. There might, however, be indirect phyto-toxic effects of glyphosate and its metabolites in processes involving the destruction of sensitive plant species [41]. Glyphosate’s additional mode of action may be related to its impacts on soil micro-organisms and subsequently plants. Moreover, glyphosate decreases chlorophyll content excessively, which can negatively impact photosynthesis [42–43]. The growth of bacterial and fungal organisms is generally inhibited by glyphosate only at concentrations far above the levels that occur in the environment [8].
1.2. Health Concerns Associated with Glyphosate
A public debate has been sparked over glyphosate residues in crops and their potential health risks. Although regulatory agencies generally deem glyphosate safe when used according to approved guidelines, some studies and concerns have raised potential risks. The toxicity status of glyphosate for humans and animals is shown in table 1. There have been several health risks associated with this herbicide:
1.2.1. Carcinogenic potential
Despite being the most widely used herbicide in the world, the long-term health effects of glyphosate remain unknown. Air, water, and soil have been polluted by its widespread use, and human and animal health problems have been linked to it. The case of glyphosate illustrates the difficulty involved in evaluating, testing, assessing, and regulating chemicals. The implementation of human studies is challenging; subsequent studies on safety and risk assessment are lacking; environmental impacts are not well understood; industry participation in assessment and approval systems is extensive; and these evaluations have significant legal implications. In addition, there are also ethical issues such as informed consent, confidentiality, and protection of vulnerable populations. Furthermore, there are also concerns about potential conflicts of interest that may arise from industry involvement in these evaluations. All of these factors make it difficult to accurately assess the risks of such pesticides and take appropriate action to mitigate them prior to their widespread use. Without proper regulation, these products can have devastating consequences. It is essential to create and enforce regulations that limit the use of high risk pesticides and ensure the safety of the public and the environment. Governments should also invest in research to better understand the potential risks of these chemicals and develop better strategies for managing them in the future. Although EPSP does not exist in humans, glyphosate has relatively low acute toxicity. Adjuvants are used in pesticides to make the active ingredients more effective. However, they can also increase the toxicity of the pesticide, making it more likely to cause negative health effects. A similar scenario could occur with glyphosate [44].
Glyphosate’s carcinogenic effect has been investigated several times since its introduction for weed control in different crops. In the last few decades, various agencies have reported different results regarding glyphosate’s carcinogenicity. Some have found that glyphosate is a probable human carcinogen, while others conclude that it is non-carcinogenic. The International Agency for Research on Cancer (IARC) classified glyphosate as probably carcinogenic in 2014 [29]. This classification has caused wide-spread concern among farmers and environmental groups. As a result, some countries have imposed restrictions on the use of glyphosate in agriculture. Fig. 2 illustrates the critical results of these agencies regarding glyphosate’s carcinogenicity.
Glyphosate’s carcinogenic status reported by different international agencies. EPA: Environmental Protection Agency; CPRC: Carcinogenicity Peer Review Committee; CARC: Cancer Assessment Review Committee; IARC: International Agency for Research on Cancer; EFSA: European Food Safety Authority; JMPR: Joint FAOWHO Meeting on Pesticide Residues; ATSDR: Agency for Toxic Substances and Disease Registry.
1.2.2. Endocrine disruption
Glyphosate may interfere with hormones because of its endocrine-disrupting effects, according to several studies [45]. These effects could potentially impact reproductive health, development, and other physiological processes. However, the evidence on glyphosate’s endocrine-disrupting potential is inconclusive, and further research is needed to establish a clear link. An overview of some studies suggests that glyphosate is capable of disrupting the endocrine system. Thongprakaisang et al. [46] performed in vitro experiments using human breast cancer cells and found that glyphosate and its commercial formulations could accelerate the growth of hormone-dependent breast cancer cells. Their hypothesis was that glyphosate might disrupt normal hormonal signals because of its estrogenic properties. Gasnier et al. [47] investigated the effects of glyphosate-based herbicides on human placental cells. In their study, herbicides triggered estrogenic responses, suggesting potential endocrine disruption. In this study, herbicides were used at very high concentrations, which may not reflect real-world exposures. Paganelli et al. [48] assessed the influence of glyphosate on amphibian larvae’s endocrine system. The researchers observed that glyphosate exposure led to developmental abnormalities and disruption of the hormonal system in amphibians. Further research is needed to determine whether these findings are relevant to human health. Clair et al. [49] evaluated glyphosate’s effects on reproductive health in rats. Reproductive parameters, hormonal profiles, and gene expression related to the reproductive system were altered. There was evidence that these effects could cause endocrine disruption, however, the study’s design and methodology were criticized. It’s critical to note that while these studies suggest potential endocrine-disrupting effects of glyphosate, other studies have not found similar results, and regulatory agencies have not universally accepted these findings. Regulatory agencies such as the EPA (Environmental Protection Agency) and EFSA (European Food Safety Authority) have concluded that glyphosate is unlikely to have any endocrine-disrupting effects when used as directed.
1.2.3. Toxicity and organ damage
In animal studies, high doses of glyphosate have been associated with acute toxicity and organ damage. These effects are primarily triggered by exposures far higher than those typically found in the environment or in food. Despite this, long-term health effects associated with chronic low-dose exposure to glyphosate residues are still being researched and debated. Glyphosate formulations were found to induce cell death and cause oxidative stress in liver, kidney, and placental cells, according to Mesnage et al. [50]. Their study suggests that commercial glyphosate formulations’ adjuvants and other ingredients might contribute to the observed results. Despite this, it should be noted that the study used concentrations higher than those commonly found in the environment or dietary sources. In Koller et al.’s [51] study, rats were exposed to glyphosate and its effects were studied. Oxidative stress and changes in liver and kidney function were found to be caused by glyphosate. This research, however, used higher doses than normal for human exposure, similar to other studies. As reported by Cattani et al. [52], rats exposed to glyphosate during development had altered neurobehavioral parameters, oxidative stress, and neuropathological changes.
1.2.4. Microbiome disruption
It has been suggested that glyphosate could disrupt the gut microbiome, which is crucial to human health. Several studies have shown that glyphosate exposure alters microbial composition and function. Nevertheless, more research is needed to fully understand how these changes will impact human health. The effect of glyphosate on the gut microbiota of poultry was investigated by Shehata et al. [53]. They discovered that glyphosate exposure decreased the amount of beneficial bacteria and increased the amount of potentially harmful bacteria in the gut microbiome. There was a potential disruption of gut microbial balance as a result of these changes. According to Motta et al. [54], glyphosate altered the diversity and composition of honey bee gut microbiota. It was found that these changes led to increased susceptibility to opportunistic pathogens and an impaired immune system. Despite these studies suggesting glyphosate may disrupt microbiomes, further research is necessary to fully comprehend the extent and significance of these effects. There are many factors that can affect glyphosate’s impact on the gut microbiome, such as dose, exposure duration, and particular microbial communities. Several studies report conflicting findings regarding glyphosate’s effects on gut microbiota, with some observing no significant effects. Further investigation is needed to determine the significance of the observed changes in the microbiome for human health.
1.3. Metabolism in Tolerant Plants
In agriculture and other applications, glyphosate is widely used as a weed killer. Genetic modification of some plants has allowed them to survive glyphosate application while surrounding weeds or non-target plants are destroyed. It involves several enzymatic reactions for a plant to become tolerant to glyphosate. Different transporters in the cell membrane allow glyphosate to enter plant cells [71]. Glyphosate is initially converted inside plant cells into a more reactive form called AMPA by an enzyme called glyphosate oxidoreductase (GOX) [72]. Neither glyphosate-tolerant nor non-tolerant plants undergo this step. Further metabolization of AMPA into harmless compounds occurs in tolerant plants. Different plant species have different pathways for detoxifying AMPA. Nonetheless, it mainly relies on enzymes such as glyphosate N-acetyltransferase (GAT), glyphosate N-acetyltransferase-like protein (GATL), and glyphosate oxidoreductase (GXR) [73]. Aminomethylphosphonic acid methyltransferase (AMMT) and glyoxylate are non-toxic metabolites that are formed as a result of these enzymes. Besides metabolic detoxification, tolerant plants can also sequester glyphosate and its metabolites in vacuoles [74]. By preventing glyphosate from reaching sensitive sites within the plant, sequestration further enhances tolerance. Mao et al. [75] investigated how lilyturf species tolerate glyphosate. According to their results, the unique EPSPS structure, multiple copies of EPSPS, and high expression level of EPSPS contribute to the species’ natural tolerance of glyphosate.
2. Methodology
The methodology employed in this systematic review was meticulously structured to ensure transparency, reproducibility, and academic rigor throughout the study selection and data extraction processes. A predetermined review protocol was established with specific objectives, clear inclusion and exclusion criteria, and standardized procedures for data extraction. This procedure was described thoroughly to ensure consistency and accuracy in synthesizing findings, aiming to reduce bias and improve the review’s reliability.
2.1. Search strategy, Eligibility Criteria, Inclusion and Exclusion Guidelines, and Quality Evaluation
The search strategy involved a systematic search across major scientific databases to identify relevant studies published between 2000 and 2024, using well-established databases including Scopus, Web of Science, PubMed, and Google Scholar. A combination of carefully selected keywords related to glyphosate residue including “Glyphosate residue in food and crops,”AND “Glyphosate residue determination,” AND “Risks associated with glyphosate residue,” AND “Glyphosate residue management” was utilized to maintain consistency, with a focus on peer-reviewed articles in English. The study selection followed the Preferred Reporting Items for Systematic Reviews (PRISMA) guidelines, excluding studies that did not meet inclusion criteria or were duplicates [76]. Conference abstracts, chapters, and thesis were not considered, and the selection process involved two independent reviewers screening titles, abstracts, and full texts of studies. Inclusion criteria were designed to select studies directly relevant to the research objectives, resulting in 42 records for further analysis. The data extraction process was conducted independently by two reviewers to ensure accuracy and consistency, with discrepancies resolved through discussion and consensus [77]. An additional reviewer intervened when disagreements persisted, enhancing data integrity and review reliability, thereby reducing bias and improving the review’s overall quality. Fig. 3 depicts the study identification, screening, and selection process, offering a visual representation of the systematic methodology employed in this review.
3. Results and Discussion
The systematic review of 42 studies published between 2000 and 2024 reveals critical insights into the prevalence of glyphosate residues in agricultural and food systems, methodologies for residue detection, and the efficacy of eco-engineering strategies for mitigating contamination risks.
3.1. Glyphosate Residues in Food and Agricultural Crops
Table 2 compiles data from studies reporting glyphosate residues in diverse range of food matrices, including cereals, honey, animal products, and processed foods across different countries. While glyphosate residues were detected globally, their concentrations varied significantly by food type, geographical region, and regulatory context. In this regards Lebanese bread samples contributed only 0.000117% of the Acceptable Daily Intake (ADI) set by Codex Alimentarius [78]. Processed foods, such as breakfast cereals in France, showed residues ranging from 6 to 34 μg kg−1, underscoring the pervasive nature of glyphosate in post-harvest and food processing chains [79]. Notably, glyphosate was detected in organic milk, conventional milk, beef, and fish in the United States at concentrations of 0.442, 0.533, 0.553, and 1.495 μg L−1, respectively, indicating its infiltration into both plant- and animal-derived products [80]. According to the United Kingdom Food Standard Agency, 27 out of 109 bread samples tested for glyphosate residues contained 0.2 mg kg−1 of this herbicide residue [81]. This is below the safety limit of 0.5 mg kg−1 of glyphosate. However, the Food Standards Agency recommends that people reduce the amount of glyphosate they consume by limiting their intake of bread and other foods that contain glyphosate residues.
3.1.1. Geographical disparities
Geographical disparities in residue levels further complicate global risk management. U.S. honey samples exhibiting 59% exceedance rates above 15 ppb, compared to European honey samples, where 21% exceeded the 50 μg kg−1 maximum residue limit (MRL) [17,82]. These variations reflect differences in agricultural practices, regulatory stringency, and environmental persistence, particularly in regions with high soil organic matter content that enhances glyphosate adsorption [34]. In Canada, glyphosate concentrations in mushrooms and juice concentrates ranged from 0.0052 to 0.21 ppm and 0.0042 to 0.038 ppm, respectively, well below national MRLs [83]. In contrast, Uruguayan honey samples exceeded the European MRL of 50 μg kg−1 in 50% of cases, reflecting lax regulatory enforcement and intensive glyphosate use in soybean cultivation [84]. These findings emphasize the need for harmonized global monitoring programs, particularly in low- and middle-income countries where regulatory infrastructure is underdeveloped.
3.1.2. Limitations
Variability in limits of detection (LOD) and quantification (LOQ) complicates cross-study comparisons. Adams et al. [85] used ion chromatography-mass spectrometry (IC-MS) with an LOD of 0.01 mg kg−1, whereas Xu et al. [86] achieved 0.03 mg kg−1 via HPLC-MS/MS. Such differences may underestimate or overestimate residue prevalence. Studies like Kolakowski et al. [83] analysed Canadian retail foods (2015–2017) but lacked longitudinal data to assess temporal trends. Similarly, Pareja et al. [84] focused on Uruguayan honey without considering seasonal application patterns.
While glyphosate itself is often deemed low-risk, commercial formulations (e.g., Roundup) contain adjuvants like polyethoxylated tallow amine (POEA), which amplify toxicity. Hao et al. [56] attributed DNA damage in A549 cells to POEA, yet regulatory assessments frequently overlook adjuvant synergism. The ubiquity of glyphosate residues underscores the need for harmonized global monitoring programs. Regulatory frameworks must integrate adjuvant toxicity and chronic exposure risks, particularly for vulnerable populations (e.g., infants consuming cereal-based formulas).
3.2. Residual Determination in Crops and Food
Table 3 evaluates studies utilizing chromatographic techniques to quantify glyphosate residues. While these methods are critical for residue monitoring, their efficacy varies by matrix complexity and analytical rigor.
3.2.1 Dominance of LC-MS/MS
Chromatographic techniques dominated residue determination, with liquid chromatography-tandem mass spectrometry (LC-MS/MS) emerging as the most sensitive and reliable method. Santilio et al. [19] achieved a limit of detection (LOD) of 0.002 mg kg−1 for glyphosate in rice using LC-MS/MS, while Goscinny et al. [95] reported a limit of quantification (LOQ) of 0.02 mg kg−1 for cereals in Belgium via ultraperformance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS).
Pesticide residues consumed in quantity and type must be considered when assessing possible adverse effects of pesticide residue intake, along with pesticide acceptable daily intake (ADI) Xu et al. [96]. The ADI is the maximum level of a pesticide that can be considered safe for human consumption. It is important to consider the type of pesticide, the type of food, and the quantity consumed when assessing the possible effects of pesticide residue intake. To assess glyphosate residue levels in soy-based infant formulas from the Brazilian market, de Souza et al. [97] used HPLC with fluorescence detection. Infant formula samples detected glyphosate concentrations ranging from none to 1.08 mg kg−1. According to this study, participants’ exposure to glyphosate is not significant when compared to the acceptable daily intake (ADI) recommended by the appropriate authorities. Therefore, it can be concluded that soy-based infant formulas in Brazil are safe for consumption. The presence of glyphosate residues in yam was assessed by LC-MS/MS with a detection limit of 0.04 mg kg−1, and a quantification limit of 0.12 mg kg−1 Wumbei et al. [98]. Twenty-one percent of field experiments and market samples contained glyphosate, although at levels below the quantification limit. The study found that glyphosate residues are present at very low levels in yam, where they may not pose a health risk. The authors concluded that glyphosate residues are not a significant health concern for consumers of yam. However, they recommended that further research be conducted to determine the long-term effects of glyphosate residues on yam. Swiss market foods were evaluated using LC/MS/MS chromatographic technique for glyphosate residues by Zoller et al. [99]. Glyphosate has been detected in pasta, wine, fruit juice and honey samples at low concentrations by quantification limits 0.0005 to 0.0025 mg kg−1. Despite this, the highest residue concentration did not approach the Acceptable Daily Intake (ADI). Therefore, glyphosate residues are not a major health issue in Switzerland’s foodstuffs.
Generally, the high solubility in water, ionic nature, low mass, high polarity, complex evaporation, low solubility in organic solvents, and low volatility are the most challenging factors in glyphosate residue analysis using simple analytical techniques Valle et al. [100]. Common chromatographic techniques, including high-performance liquid chromatography (HPLC) and gas chromatography (GC) using a wide range of detectors, are primary methods for determining glyphosate in food and the environment Ulrich and Ferguson, [101]. GC and HPLC could be connected with mass spectrometry (MS) to isolate complex compounds, quantify analytes, determinate unfamiliar peaks and detect trace contamination residues in different matrices Almeida [102]. In other words, mass spectrometry could play a vital role in improving the efficiency and accuracy of residue detection. In every residue determination method, the critical factors such as detection efficiency, recovery percentage, the limits of detection and quantification depend on extraction and purification techniques and the origin of the sample used for residue analysis Kapsi et al. [103].
The losses caused by consuming food contaminated with herbicide residues are much more significant than the cost of measures in the residue determination process Sharma et al. [104]. Analysis and identification of glyphosate residues are costly and time-consuming; therefore, the simple simultaneously analyzing methods cannot detect this herbicide and its metabolites in different matrices Kim et al. [105]. On the other hand, as the most used pesticide globally, glyphosate is not continuously monitored. Accordingly, no systematic data is associated with glyphosate and its metabolites residues in the environment, crops, and food. A basic chromatographic determination of glyphosate residues in crops and food can be seen in Fig. 4.
3.2.2. Discrepancies and limitations
Despite advancements, methodological heterogeneity posed challenges. For example, Adams et al. [85] utilized ion chromatography-mass spectrometry (IC-MS) with an LOD of 0.01 mg kg−1 for cereal-based infant foods, whereas Xu et al. [86] employed HPLC-MS/MS for Wuyi Rock tea, achieving an LOD of 0.03 mg kg−1. Such discrepancies complicate cross-study comparisons, particularly when analyzing complex matrices like soy protein isolate or bovine muscle, where glyphosate binds to proteins or lipids, necessitating matrix-specific adaptations [106,107].
Validation gaps is another challenge regarding this subject. Few studies validated their methods against international guidelines (e.g., SANTE/11813/2017). Ehling and Reddy [106] demonstrated robust validation for soy protein isolate but excluded milk, raising concerns about extrapolation to other matrices. Disparities in extraction and derivatization methods (e.g., dansyl chloride vs. FMOC-Cl) hinder data comparability. For example, Khrolenko and Wieczorek [108] reported 0.025 mg L−1 in juices using p-toluenesulphonyl chloride, whereas Rubio et al. [17] used alkaline hydrolysis for honey, yielding higher variability.
The exclusion of co-formulants in analytical protocols further limited risk assessments. Woźniak et al. [62] demonstrated that Roundup 360 PLUS, a commercial formulation containing poly-ethoxylated tallow amine (POEA), induced greater DNA damage in human peripheral blood mononuclear cells than glyphosate alone, yet analytical studies rarely quantified adjuvant residues. This oversight underscores the need for harmonized protocols that integrate multi-residue analysis of glyphosate, its primary metabolite aminomethylphosphonic acid (AMPA), and adjuvant compounds to reflect real-world exposure scenarios.
3.3. Environmental Removal of Glyphosate Residues
Table 4 synthesizes studies on adsorption, bioremediation, and phytoremediation strategies. While these methods show promise, their real-world applicability remains constrained by technical and ecological factors and faced scalability challenges.
3.3.1. Adsorption dominance
Carbon-based adsorbents (e.g., woody biochar, graphene oxide) achieved >90% removal efficiency in aqueous systems [26,117]. Mayakaduwa et al. [117] reported a maximum adsorption capacity of 44 mg g−1 for woody biochar at pH 5–6, attributed to hydrogen bonding and electrostatic interactions, while Santos et al. [26] achieved a 92% removal rate using graphene oxide modified with iron oxide nanoparticles. However, field applications were hindered by soil matrix interference and production costs, particularly for energy-intensive biochar pyrolysis.
The process of adsorption is one of the most commonly used methods for removing chemicals from water solutions. It involves the use of adsorbents, which are materials with a higher affinity for the pollutants than the water. The adsorbents bind to the pollutants and are then removed, leaving the water free from contaminants Tian et al. [118]. Adsorption is a cost-effective and environmentally friendly method of water treatment, as it requires minimal energy input. Furthermore, it is safe to use for both humans and animals. It has been demonstrated in several laboratory studies that an adsorption approach is effective for the removal of pesticide residues from aquatic environments Odoemelam et al. [119]. A hierarchically porous metal-organic framework was reported to be an effective adsorbent for glyphosate removal from water Naghdi et al. [120]. According to Diel et al. [121] glyphosate was removed from an aqueous matrix using carbon nanotubes with multiple walls modified with metal nanoparticles. Various removal levels have been achieved, ranging from 40.33% to 68.38%. According to Sen et al. [122], forest soil shows 87.8 percent removal efficacy for glyphosate from aqueous solutions at pH 12. This suggests that forest soil could be a promising low-cost adsorbent for the removal of glyphosate from aqueous solutions. The pH of the forest soil was found to be optimal for glyphosate adsorption, which suggests that the forest soil contains compounds that can enhance glyphosate adsorption. Furthermore, the low-cost adsorbent nature of the forest soil could make it an attractive option for industrial and agricultural applications. In aqueous solutions, Eucalyptus camaldulensis bark activated char was tested as an adsorbent and 98 percent glyphosate removal was achieved at pH 10 Sen et al. [123]. As a result of the bark activated char binding with glyphosate molecules in the aqueous solution, less glyphosate is released into the environment.
3.3.2. Bioremediation potential
Bioremediation strategies utilizing microbial and plant-based systems demonstrated variable efficacy. Burkholderia spp. and Pseudomonas aeruginosa degraded 76–85% of soil-bound glyphosate by cleaving the C–P bond via the glyA gene pathway [27,124], while Phytoremediation with Festuca arundinacea [125] and Salvinia biloba [126] achieved 87–100% efficiency, utilizing plant-microbe synergies. Adsorption and microbial activity are pH-sensitive. Hottes et al. [127] reported 90% glyphosate removal by Mg2Al-layered double oxides at pH 10, whereas acidic conditions favored biochar efficacy. Such variability complicates field applications.
Herbicides reach the soil environment at high concentrations following application for weed control in agroecosystems. This is because herbicides are sprayed in large amounts onto crops and can be washed away by rain into the soil where they can spread and accumulate Mehdizadeh et al. [128]. This can have a detrimental effect on the ecosystem, as the herbicides can damage beneficial organisms like earthworms and other soil invertebrates. This can cause changes in the structure of the soil, leading to a decrease in soil fertility and a decrease in the growth of plants Ruuskanen et al. [129]. Additionally, herbicides can also have a negative effect on the water supply as they can leach into groundwater. There are a number of factors that affect herbicide fate in the environment, including soil physiochemical properties, soil microorganism populations, and climate conditions Hassaan et al. [130]. A rainfall rate of 1 mm/min for 1 hour carried 14% of sprayed glyphosate by runoff and suspended load from clay loam soil. This indicates that the amount of glyphosate removed from the soil surface was directly proportional to the rain intensity. Higher rain intensity resulted in more glyphosate being transported away from the soil surface Yang et al. [131]. Soil acts as a filter for herbicides, and its properties can affect the rate at which they are absorbed or degraded. Soil microorganisms can also break down herbicides, while climate conditions can influence how quickly they evaporate, runoff or leach into groundwater. Soil pH and organic matter content can positively influence the fate of herbicides, as well as the presence of other chemicals such as metal ions, which can bind the herbicide and reduce its availability for degradation van Hall et al. [132].
Microorganisms play a significant role in the degradation of pesticide compounds, since they are able to degrade the pesticide into simple or relatively non-harmful compounds. This process is known as bioremediation. Bioremediation is an effective and environmentally friendly way to remove pollutants from the environment and can be used to reduce pesticide residues in the environment Pande et al. [133]. There is no doubt that bacteria have the best detoxifying abilities among microbes. Bioremediation is also cost-effective and can be implemented with minimal disruption to the environment. Bacteria and other microbes are able to break down pollutants into smaller, more harmless molecules, which are then easily removed by natural processes such as evaporation and sedimentation Bala et al. [134]. The bioremediation of contaminated sites could be classified into two main categories, phytoremediation and microbial remediation. Phytoremediation uses plants to absorb and degrade pollutants, while microbial remediation relies on bacteria and other microbes to break down pollutants. Both methods have proven to be effective in reducing environmental contamination. Phytoremediation is usually used for heavy metals, while microbial remediation is recommended for organic pollutants. Both methods have advantages and disadvantages, and the most appropriate choice depends on the type of contamination and the resources available Shehata et al. [135].
Glyphosate can be degraded by native soil microbial communities that contain glyphosate-degrading microorganisms once it enters the soil environment. These microorganisms can rapidly degrade glyphosate, reducing the risk of environmental contamination and pollution. Therefore, management of soil pH and organic matter content can reduce herbicide contamination risk and promote glyphosate degradation Muskus et al. [136]. Nguyen et al. [25] investigated bacteria capable of degrading glyphosate and improved their degradation requirements for bioremediation. Using the strain Rhodococcus soli G41, it was found to have a high glyphosate degradation rate. It degraded 42.7% and 47.1% of glyphosate after 7 and 14 days, respectively. This can be attributed to the strain’s ability to produce enzymes that are capable of breaking down glyphosate into smaller substances that can then be further degraded into less toxic forms by bacteria. This suggests that the G41 strain is an efficient bacterium for bioremediation of glyphosate-contaminated soil.
3.3.3. Discrepancies and limitations
Nevertheless, metabolite accumulation, particularly AMPA, remained a concern. Carranza et al. (2019) [137] documented 57% glyphosate degradation by Aspergillus oryzae in contaminated soil but did not quantify AMPA, a persistent byproduct with comparable toxicity. Additionally, Bioremediation often generates AMPA, a persistent metabolite. Carranza et al. [137] reported 57% glyphosate degradation by Aspergillus oryzae but did not quantify AMPA, risking secondary contamination. Similarly, urinary biomonitoring studies by Soukup et al. [138] detected glyphosate and AMPA in 99.6% of participants, with concentrations correlating positively with processed food consumption, yet regulatory thresholds do not account for cumulative dietary exposure.
However, field trials were notably scarce, with most studies confined to controlled laboratory conditions, raising questions about ecological trade-offs. For example, López-Chávez et al. [139] reported 87% glyphosate remediation using Panicum maximum, an invasive grass species that risks displacing native flora.
The review also highlighted significant discrepancies in glyphosate’s toxicological profile. While regulatory agencies such as the European Food Safety Authority (EFSA) and the U.S. Environmental Protection Agency (EPA) deemed glyphosate unlikely to pose carcinogenic risks at recommended doses, the International Agency for Research on Cancer (IARC) classified it as “probably carcinogenic” based on in vitro and animal studies [35, 69]. Epidemiological data further muddied the waters, Acquavella et al. [65] found no association between glyphosate and non-Hodgkin’s lymphoma in pooled cohort analyses. Endocrine disruption studies yielded similarly conflicting results. Gasnier et al. [47] observed estrogenic activity in human placental cells exposed to glyphosate-based herbicides. These inconsistencies underscore the influence of study design, exposure metrics, and adjuvant inclusion in toxicological assessments.
4. Practical Strategies for Avoiding Glyphosate Residues
There are various simple strategies to minimize the exposure to glyphosate residues in food and crops. One such strategy is to choose organic foods and buy food from local farmers. Organic farming prohibits the use of synthetic pesticides, including glyphosate. Additionally, consuming a diverse range of foods could reduce reliance on specific crops with high glyphosate usage. This can help minimize potential exposure to residues from any source. Practical strategies are provided below.
4.1. Support Transparent Labeling
Labeling genetically modified organisms (GMOs) and glyphosate can be included on food product labels. Consumers can make informed choices and select products that match their preferences and concerns by reading clear labels Kaczorowska et al. [143]. Without clear labeling, consumers are at a disadvantage since they do not know what is in their food. In order to make knowledgeable decisions regarding their health and the environment, consumers should be able to find out what is in their food and how it was produced. In this regard, companies should be held responsible for accurately labeling their products. Furthermore, the government should enact regulations that require companies to provide clear, accurate labels on their products.
4.2. Consider Glyphosate-Free Brands
In order to avoid glyphosate residues in food and crops, brands that explicitly state their commitment to avoiding glyphosate use might be considered. It would be possible for companies to voluntarily test their products for glyphosate residues and guarantee their absence. Choosing products free of glyphosate supports companies that are reducing their environmental impact and protecting consumers’ health.
4.3. Investment in Sustainable Agriculture
Organic farming practices minimize synthetic chemicals, including glyphosate, by using sustainable farming practices. Supporting sustainable agriculture methods reduces the overall use of glyphosate Krimsky et al. [11]. These systems benefit from increased biodiversity, reduced pesticide application and soil degradation, and improved water quality. The result is the reduction of contamination of food and water sources, the protection of pollinators from pesticide use, and the reduction of human exposure to these chemicals.
4.4. Developing Integrated Weed Management (IWM)
In IWM, preventative measures and biological controls are used to control weeds Karlsson Green et al. [144]. Through a holistic and environmentally friendly approach to crop protection, IWM reduces the need for herbicides, including glyphosate. In addition to reducing the amount of toxic chemicals used, this approach also helps to maintain a balanced ecosystem. Additionally, it minimizes the risk of weeds becoming resistant to herbicides and the impact of weeds on crop yields Deguine et al. [145]. Transitioning from glyphosate reliance to IWM-combining crop rotation, cover cropping, and mechanical weeding-could reduce residue accumulation. Beckie et al. [28] demonstrated that IWM systems maintained yield parity in glyphosate-resistant canola while cutting herbicide use by 30%. Policymakers should subsidize farmer training and incentivize agroecological practices through carbon credits or premium pricing for residue-free produce.
4.5. Advocating for Stricter Regulations
This could support stricter regulations on glyphosate use by staying informed of regulatory developments and advocating for more rigorous testing, monitoring, and limits on glyphosate residues in food and water. This could include engaging with government and non-government organizations to ensure that the most up-to-date scientific evidence is used in decision-making around glyphosate use. It could also involve raising public awareness and empowering communities to demand better, safer food and water. Public health would be protected by strict regulations preventing glyphosate from being misused or used in ways that might cause contamination such as spraying it on crops around water sources Bacon et al. [146]. In this regard, reports on acceptable residue levels in food may be released periodically by national food safety agencies. Regular monitoring by food safety agencies would also help to ensure that acceptable residue levels are not exceeded in food products.
4.6. Promoting Research and Innovation
Developing alternatives to herbicides such as glyphosate should be the focus of research efforts. This may include encouraging the use of cover crops, crop rotation, mechanical weed control, and other eco-friendly farming practices. These alternatives could reduce the use of herbicides and their associated environmental impacts, as well as the risk of glyphosate resistance in weeds. Moreover, advancing technologies can improve and more efficiently farm methods, resulting in higher crop yields and less land and resource use for food production. In the long run, this can result in more resilient and food-secure agriculture that is more adaptable to climate change. Additionally, precision agriculture techniques, such as soil mapping and variable-rate application, allow farmers to get the most out of their resources while managing pests and weeds. This can reduce input costs and increase production while minimizing agriculture’s environmental impacts.
5. Future Perspectives
Emerging technologies and interdisciplinary approaches will shape the next frontier in glyphosate risk mitigation. Advances in nanotechnology, CRISPR-based microbial engineering, and AI-driven precision agriculture hold promise for developing targeted bioremediation systems and non-chemical weed control alternatives. Future research must prioritize longitudinal studies to unravel chronic exposure impacts on human health and ecosystem resilience, particularly for understudied metabolites like AMPA. Climate change adaptation strategies will require re-evaluating glyphosate’s environmental fate under shifting precipitation and temperature regimes. The integration of multi-omics approaches (metagenomics, metabolomics) could decode microbial consortia’s role in glyphosate degradation while optimizing plant-microbe synergies for phytoremediation. Policy frameworks must evolve to embrace planetary health metrics, linking glyphosate reduction targets to Sustainable Development Goals (SDGs) for soil conservation and biodiversity preservation. Citizen science initiatives and blockchain-enabled supply chain transparency could democratize residue monitoring, bridging data gaps in low-income regions. Ultimately, transforming agricultural paradigms toward agroecological systems supported by green chemistry innovations and circular economy principles will be critical to breaking glyphosate dependency while ensuring food security in a chemically constrained world.
6. Conclusions
The synthesis of 42 studies underscores the pervasive presence of glyphosate residues across global agricultural and food systems, driven by its extensive use and environmental persistence. While regulatory thresholds are often unmet, the ubiquity of residues—detected in crops, animal products, and processed foods—signals a latent risk requiring proactive mitigation. The variability in residue levels across regions highlights the influence of agricultural practices, regulatory rigor, and environmental factors, such as soil composition and climate, necessitating context-specific interventions. Crucially, the review reveals that current risk assessments often overlook adjuvant synergism and chronic low-dose exposure, particularly for vulnerable populations, underscoring gaps in regulatory frameworks.
The broader implications of these findings extend to global food security and ecological integrity. Glyphosate’s infiltration into food chains and ecosystems threatens biodiversity, soil microbial health, and water quality, while its potential endocrine-disrupting and microbiome-altering effects raise public health concerns. Transitioning from glyphosate-dependent systems is not merely a regulatory challenge but a prerequisite for sustainable agriculture. Eco-engineering strategies, such as bioremediation and adsorption, demonstrate promise but require scaling to address contamination at source points, emphasizing the need for innovations that balance agricultural productivity with environmental stewardship.
Actionable recommendations stem from the urgency to harmonize detection protocols, integrate adjuvant toxicity into risk assessments, and prioritize eco-friendly alternatives. Policymakers should enforce stricter residue limits, subsidize farmer training in Integrated Weed Management (IWM), and incentivize organic practices through carbon credits or premium pricing. Investment in precision agriculture and bioherbicide development can reduce reliance on synthetic herbicides, while public awareness campaigns on glyphosate-free labeling and dietary diversification can empower consumer choices. Collaborative research must address metabolite persistence, such as AMPA, and optimize scalable bioremediation techniques. Ultimately, a multi-stakeholder approach, bridging science, policy, and community engagement, is vital to mitigate glyphosate’s legacy and foster resilient agroecosystems.
Notes
Acknowledgments
In this review, we would like to express our gratitude to Zoleikha Mehdizadeh (Department of Biology, Payame Noor University, Iran) for the valuable insights she shared with us.
Funding
This review received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.
Conflict-of-Interest Statement
The authors declare that they have no conflict of interest.
Author Contribution Statement
M.M. (Researcher): Conceptualized and designed the study, conducted experiments, validated results, created visualizations, drafted and edited the manuscript, and managed, supervised, and provided resources for the project. D.K.A.A.T. (Professor): wrote and revised the manuscript. A.O. (PhD student): Contributed to methodology development, validated results, drafted the manuscript, and participated in review and editing. M.F.A. (Assistant Professor): wrote and revised the manuscript. A.R.C. (Researcher): wrote and revised the manuscript. M.A. (Professor): wrote and revised the manuscript.
Nomenclature
ADI
acceptable daily intake
AMMT
Aminomethylphosphonic acid methyltransferase
AMPA
aminomethylphosphonic acid
EFSA
European Food Safety Authority
EPA
Environmental Protection Agency
EPSP
5-enolpyruvylshikimate-3-phosphate
GAT
glyphosate N-acetyltransferase
GATL
glyphosate N-acetyltransferase-like protein
GC
gas chromatography
GC-PFPD
gas chromatography equipped with a pulsed flame photometric detector.
GMOs
genetically modified organisms
GOX
glyphosate oxidoreductase
GXR
glyphosate oxidoreductase
HPLC
High Performance Liquid Chromatography
IARC
International Agency for Research on Cancer
IC-HRMS
ion-chromatography-high resolution mass spectrometry.
IPM
Integrated Pest Management
LC/ESI-MS/MS
liquid chromatography coupled with electrospray ionization tandem mass spectrometry.
LC/LC-FD
coupled-column liquid chromatography system with fluorimetric detection.
LC-MS-MS
Liquid Chromatography with tandem mass spectrometry
MS
mass spectrometry
UPLC-MS/MS
ultraperformance liquid chromatography-tandem mass spectrometry.
